PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000208.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 224aa    MW: 23786.7 Da    PI: 4.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000208.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-194191155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Itr_sc000208.1_g00007.1 41 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 91
                             68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-134191IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2142100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-3242100IPR001471AP2/ERF domain
PROSITE profilePS5103223.4464299IPR001471AP2/ERF domain
SMARTSM003801.6E-3542105IPR001471AP2/ERF domain
PRINTSPR003672.2E-104354IPR001471AP2/ERF domain
CDDcd000189.95E-3443101No hitNo description
PRINTSPR003672.2E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMSTESLPDS PVSVVNCGGG GEVSGPESKK MKRIRDSSKH PVYRGVRMRS WGKWVSEIRE  60
PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GSSAILNFPD LAGILPRPDS LSPRDIQSAA  120
AKAAAMEKFD LPSPSSHSSS SSSSSLSSLV SAIDLATSEE LSEIVELPSL DTSFDSLGLG  180
GEIVYVDSVE EWLYPPPWLG GAADDGGGGP GIISSSFESS LWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-174399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291182.11e-79PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD33e-72DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A061GK295e-79A0A061GK29_THECC; Integrase-type DNA-binding superfamily protein
STRINGVIT_04s0008g03400.t011e-75(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-66ERF family protein